PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000871_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 549aa    MW: 63467.8 Da    PI: 9.6008
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000871_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1232.7e-0723101787
                              FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                                       A+e GF +++++s+k+  ++g   k ++vC+++ ++e + +     +r++++ r+gC+ k  +   k +++w+ +  
  FANhyb_icon00000871_a.1.g00001.1  23 ANENGFATVIRRSTKKdPQTGIYLKIELVCTRSRQPELKGSG----KRRTPSGRVGCQWKGYIAFYKrENTWKFNVQ 95 
                                       8999****999998885778888999*******999998777....899999*****999888877779******** PP

                              FAR1  82 eleHnH 87 
                                       +  HnH
  FANhyb_icon00000871_a.1.g00001.1  96 RDFHNH 101
                                       ****** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-423101IPR004330FAR1 DNA binding domain
PfamPF105513.9E-30222319IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEEIIGVRID QMEDCKRAVE HLANENGFAT VIRRSTKKDP QTGIYLKIEL VCTRSRQPEL  60
KGSGKRRTPS GRVGCQWKGY IAFYKRENTW KFNVQRDFHN HYRVNAERIP VIRRHKRNGN  120
VEVLNQIRAL NNNRRLTAQD IAEEVGRQYS LEVTAKDVQN IRDEDQRALL GGRTPTQQFL  180
HNLQNDSSAL VVDFQTDAQN RVEYVLWTYQ WSIETWKNHN EVISLDDTYK TNRFNLPLMQ  240
ITGITGMNST FNVAWALIKD ERQTSYQWVL TRLQRIMDEH QIPLPMVIIT DYDTALRNAL  300
ETVFPRVPTQ LCLWHVMKNV VYNIGKKWEG TLEGTLLGER LGGVGTGIRR EGNHLEHEDA  360
NANAHAESVA THLMEGPERA VFGGNARPRI NINSVQQPGP GRSFVDSADG ILSAWRVCVY  420
AETEEMFTNN WRILEREFSD QRVKATSRTE GSHSSLKKHL KNRNGDLIAL NNAITTMREK  480
QERNYRNEME KQMHKVLPQH RSQLFNLVRC RVSFAALRML EDQANQAHNN SRMPLTVNWT  540
CSGVFTAQF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-19FAR1-related sequence 5